August 2006 Archives by thread
Starting: Tue Aug 1 04:46:15 CEST 2006
Ending: Thu Aug 31 18:49:29 CEST 2006
Messages: 367
- [BioC] One bad printtip in printtip loess using maNorm2D
Ye, Bin
- [BioC] how to handle pooled replicate?
Jianping Jin
- [BioC] how to handle pooled replicate?
Sean Davis
- [BioC] Error using ABPkgBuilder?
Simon, Reinhard (CIP)
- [BioC] Error using ABPkgBuilder?
Simon, Reinhard (CIP)
- [BioC] limma: read.maimages possibility to warn the user?
Gordon Smyth
- [BioC] Simpleaffy - I'm sorry, I do not know about chip type: <x> errors
Crispin Miller
- [BioC] Choosing results from LIMMA analysis
Sharon
- [BioC] strange effect of "half" bkg substraction in Limma
J.delasHeras at ed.ac.uk
- [BioC] Course***Dr Frank Harrell's Regression Modeling Strategies in R/Splus course *** September 2006 near you (San Francisco, Washington DC, Atlanta)
Sue Turner
- [BioC] Course***Dr Frank Harrell's Regression Modeling Strategies in R/Splus course *** September 2006 near you (San Francisco, Washington DC, Atlanta)
Sue Turner
- [BioC] Limma: p.adjust(F.p.value) vs 'nestedF'
Sharon
- [BioC] exclude flagged spots in limma
Yolande Tra
- [BioC] Call for Participation - CompLife 2006
Thorsten Meinl
- [BioC] how to get affy probe set physical location on the chip?
Yanqin Yang
- [BioC] exclude flagged spots in limma
Marcus Davy
- [BioC] memory.limit
Dmitriy Scvortsov
- [BioC] GOALLLOCUSID error [GOstats]
Wenjian Yang
- [BioC] GO annotation inconsistency
Daniel Gatti
- [BioC] combineAffyBatch problem
Catherine Dumur
- [BioC] R CMD check and RUnit
Gorjanc Gregor
- [BioC] limma: makeContrasts()
Gordon K Smyth
- [BioC] limma: makeContrasts() now accepts character vectors
Gordon K Smyth
- [BioC] Choosing results from LIMMA analysis
Gordon K Smyth
- [BioC] Problem with installation of RCurl
swang
- [BioC] AnnBuilder problem with CHR slot
Dario Greco
- [BioC] normalisation assumptions (violation of)
J.delasHeras at ed.ac.uk
- [BioC] convert library for microarrays data
Sébastien Boisvert
- [BioC] athPkgBuilder
Tine Casneuf
- [BioC] annotation package for ecoli2
Yanqin Yang
- [BioC] normalisation assumptions (violation of)
J.delasHeras at ed.ac.uk
- [BioC] Genbank accessions for GOstuff
adlai burman
- [BioC] Cox model selection
Benjamin Haibe-Kains
- [BioC] make.cdf.package
Lana Schaffer
- [BioC] question: fit2$F.p.value
Mistretta, Toni-Ann
- [BioC] athPkgBuilder data source
Nianhua Li
- [BioC] How to deal with multiple factors
Tarun Nayar
- [BioC] BioC2006, issues with makePlatformDesign package
Robert Citek
- [BioC] Saving list as tab del file
Marco Blanchette
- [BioC] where to find the package tcltk for linux R
zhu zhidong
- [BioC] how to check BioConductor version?
Jianping Jin
- [BioC] (no subject)
Tine Casneuf
- [BioC] problem loading affycoretools
Jenny Drnevich
- [BioC] how to retrieve data in list using getBM in biomaRt package?
swang
- [BioC] how to retrieve data in list using getBM in biomaRt package?
James W. MacDonald
- [BioC] question: fit2$F.p.value
Gordon Smyth
- [BioC] [R-SIG-Mac] trouble running Bioconductor
stefano iacus
- [BioC] Postdoctoral Fellowship opportunity at Rosetta Inpharmatics, Seat tle, WA
Rohl, Carol A
- [BioC] [R] problem loading affycoretools - solved!
Jenny Drnevich
- [BioC] Affymetrix Promoter tiling array
Wu, Xiwei
- [BioC] Non windows utility for CEL file Binary to Ascii format conversion
Lakshmanan Iyer
- [BioC] Microarray analysis with continuous variables
David K Pritchard
- [BioC] Non windows utility for CEL file Binary to Ascii format conversion
michael driscoll
- [BioC] Illumina WG-6 Annotation file
Simon Lin
- [BioC] limma and 2way anova
Lisa Luo
- [BioC] How to create a MAList or ExprSet object from a matrix
swang
- [BioC] RMA and justRMA error
aedin
- [BioC] RMA and justRMA error
aedin
- [BioC] RMA and justRMA error
aedin
- [BioC] athPkgBuilder data source :missing probesets
Tine Casneuf
- [BioC] Software Engineer Position at the EBI, Cambridge UK
Misha Kapushesky
- [BioC] Limma-Targets file for Imagene data
Jailwala, Parthav
- [BioC] Post-doc and Job
Robert Gentleman
- [BioC] annotation package for chicken affyprobes
Nianhua Li
- [BioC] Analysis of Real Time PCR data
Ulrik Stervbo
- [BioC] Affymetrix 500k SNP chips -- copy number/LOH/deletions
Stephen Henderson
- [BioC] qc
Per.Broberg at astrazeneca.com
- [BioC] Affymetrix 500k SNP chips -- copy number/LOH/deletions
Stephen Henderson
- [BioC] Affymetrix 500k SNP chips -- copy number/LOH/deletions
Stephen Henderson
- [BioC] error with GOHyperG
Tony Long
- [BioC] merge{base}
Jay Shin
- [BioC] Changing the value of sampleNames for exprSet
Jeff Lande
- [BioC] Extracting pvals for PA calls in affy
Kartik Pappu
- [BioC] limma and 2way anova
Gordon Smyth
- [BioC] rflowcyt Programming Jamboree
Ryan Brinkman
- [BioC] Factorial Design in Limma for Imagene data
Jailwala, Parthav
- [BioC] WEBBIOC
Verma, Seema
- [BioC] microarray dataset
Weiwei Shi
- [BioC] athPkgBuilder data source :missing probesets
Justin Borevitz
- [BioC] Analysing categorical CGH data
aedin
- [BioC] Bioconductor Training Course
Robert Gentleman
- [BioC] athPkgBuilder
Nianhua Li
- [BioC] athPkgBuilder
Nianhua Li
- [BioC] Relative distribution of Gene Lengths
Marco Blanchette
- [BioC] Pvalue in MAS5 or RMA results
Di Wu
- [BioC] Pvalue in mas5 or RMA solvement
Di Wu
- [BioC] limma makeContrasts
Ben Nota
- [BioC] hypergeometric enrichment of GO terms
Axel Rasche
- [BioC] readGenericHeader problem in limma 2.7.8?
Bobby Prill
- [BioC] maanova: missing observations in cov/cor
Matthew Vaughn
- [BioC] Limma : Imagene data & 2x2 factorial design
Jailwala, Parthav
- [BioC] biomaRt problem
Dario Greco
- [BioC] CEL.list
D.Enrique ESCOBAR ESPINOZA
- [BioC] CEL.list
James W. MacDonald
- [BioC] rflowcyt - read.series.FCS function
Jabez Wilson
- [BioC] 3 September Courses: (1) Regression Modeling Strategies in R/Splus, (2) R/Splus Advanced Programming, (3) R/Splus Fundamentals
Sue Turner
- [BioC] 3 September East Coast Courses: (1) Regression Modeling Strategies in R/Splus, (2) R/Splus Advanced Programming, (3) R/Splus Fundamentals and Programming Techniques
Sue Turner
- [BioC] Problems installing Bioconductor
Saurav Pathak
- [BioC] Problems installing Bioconductor
Oosting, J. (PATH)
- [BioC] 3 Courses: (1) Prof Frank Harrell *** Regression Modeling Strategies in R/Splus, (2) R/Splus Advanced Programming, (3) R/Splus Fundamentals and Programming Techniques
Sue Turner
- [BioC] CEL.list vol 2
D.Enrique ESCOBAR ESPINOZA
- [BioC] RLMM questions
Amit Bahl
- [BioC] expression call
Glazko, Galina
- [BioC] help with justPlier
He, Yiwen (NIH/CIT) [C]
- [BioC] ensembl connection
TM
- [BioC] readGenericHeader problem in limma 2.7.8?
Gordon K Smyth
- [BioC] plier error
D.Enrique ESCOBAR ESPINOZA
- [BioC] mas5 question
D.Enrique ESCOBAR ESPINOZA
- [BioC] plier error
Crispin Miller
- [BioC] Importing CDF file for custom array using makecdfenv
Ann Hess
- [BioC] GCRMA Bayes theory question
Anne Pohrt
- [BioC] Importing CDF file for custom array using makecdfenv
Michal Okoniewski
- [BioC] ExprSetbuilder Excel AddIn
Werre, Stephen
- [BioC] Limma weights, P values and differential expression
Alfredo Juncal
- [BioC] illumina --> limma?
Anand Patel
- [BioC] scale of mas5, rma, dchip, and plier results
He, Yiwen (NIH/CIT) [C]
- [BioC] GO annotation/analysis for ath1121501
Ann Hess
- [BioC] Making a CDF environment
Sung-Chur Sim
- [BioC] "automatic association analysis"
Weiwei Shi
- [BioC] 'multtest' installation problem
Glazko, Galina
- [BioC] Bioconductor installation problem
Debashis Bhattacharya
- [BioC] "automatic association analysis"
Francois Pepin
- [BioC] [R] Need help with difficulty loading page www.bioconductor.org
Martin Morgan
- [BioC] "automatic association analysis"
Weiwei Shi
- [BioC] 'multtest' installation problem
Glazko, Galina
- [BioC] biomaRt... possible to specify db version
aedin culhane
- [BioC] High Throughput Affy Arrays
Sanchita Bhattacharya
- [BioC] Affy High Throughput arrays
sanchita at MIT.EDU
- [BioC] Limma weights, P values and differential expression
Gordon Smyth
- [BioC] BIRD Call for papers and posrters: New submission deadline September 15
Prof.Roland Wagner
- [BioC] Loading table of logratios into limma
Karen Vranizan
- [BioC] limma and multiple groups
Lisa Luo
- [BioC] heatmap colors
Giovanni Coppola
- [BioC] High Throughput Affy Arrays
Aedin Culhane
- [BioC] Bioconductor website troubles
Seth Falcon
- [BioC] loading affyPLM with R 2.4.
Oliver Hartmann
- [BioC] Installation Problems
McGee, Monnie
- [BioC] new user trying to create a cdf package for custom array
Schwartz, Donald
- [BioC] FW: Cannot restore saved data in .Rdata after loading tilingArray - object 'breakpoints' not found
Steven McKinney
- [BioC] Bug/problem reporting: Possible to modify posting guide FAQ?
Steven McKinney
- [BioC] Query in installation problem
ganvita at ibab.ac.in
- [BioC] SAM: siggenes and samr
claudio.is at libero.it
- [BioC] Question about Limma
Tighiouart, Hocine
- [BioC] Question about Limma
Hocine Tighiouart
- [BioC] Bioconductor installation problem on Mac
Debashis Bhattacharya
- [BioC] bioinformatics positions available
Tarca, Adi
- [BioC] a simple question
Weiwei Shi
- [BioC] Scripts to handle array CGH data files from NimbleGen
rdesprat
- [BioC] limma subsetting issue
Gordon K Smyth
- [BioC] plier error
Crispin Miller
- [BioC] Reading in raw ImaGene files uisng marray
Noah Cohen
- [BioC] maQualityPlots on Mac
McGee, Monnie
- [BioC] funny RankProd output
Cody Olsen
- [BioC] maQualityPlots on Mac - Nevermind
McGee, Monnie
- [BioC] maQualityPlots on Mac
Herve Pages
- [BioC] Reading in raw ImaGene files uisng marray
Gordon Smyth
- [BioC] Timecourse package - mb.long() - out.t = T: object "modt" not fou nd
De Bondt, An-7114 [PRDBE]
- [BioC] problem with limmaGui input file
Donofrio
- [BioC] GOstats and library ath1121501
Martin Olivier
- [BioC] wrong A in limma topTable with duplicateCorrelation?
Christine Oger
- [BioC] GEOquery : 'cannot open URL'
Glazko, Galina
- [BioC] error genefilter installation
marco fabbri
- [BioC] Cancer genome project SNP data
Daniel Brewer
- [BioC] convert library for microarrays data
Alastair Droop
Last message date:
Thu Aug 31 18:49:29 CEST 2006
Archived on: Fri Sep 1 20:09:49 CEST 2006
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