When I straighten necks out with an upbow, I clamp them in the opposite direction of what you show.
That is, I face the fingerboard down and support each end on a block of wood. Then I machine a piece of wood to match the back contour of the neck, but be flat on the other side. I place this piece of wood on the back of the neck in the area of the bow. Clamp down.
The spacers should be used, IMHO, only to "replace" compressed wood. If the wood is compressed, that means the rod was over-tightened. If the rod was over-tightened, that means that someone was trying really hard to pull out a bow that the truss rod wasn't correcting.
You should straighten the neck, and then use the truss rod to keep it straight. In other words, I'd definitely "help" the neck into a straight line with a clamp, rather than relying on the truss rod to do it for me.
Again -- somewhat along the lines of what I thing Sp. Guit. was getting at -- and the same warning I posted to a nearly-identical question last week -- don't do any of this if you don't know what you're doing. Guitar necks will break if you apply too much pressure with clamps. If you're unsure, take it to someone who knows how to do it.